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Resources

Case Studies

HTG EdgeSeq Immune Response Cytokine Release Syndrome with CAR T cell therapy

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HTG EdgeSeq miRNA WTA Diabetes Case Study

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HTG EdgeSeq miRNA WTA Osteoclasts Case Study

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HTG EdgeSeq Immune Response Rheumatoid Arthritis Case Study

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HTG EdgeSeq Immune Response Inflammatory Bowel Disease Case Study

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HTG EdgeSeq Immune Response Systemic Sclerosis Case Study

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HTG EdgeSeq miRNA WTA Breast Case Study

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HTG EdgeSeq miRNA WTA UV Case Study

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HTG EdgeSeq miRNA Whole Transcriptome Assay identifies miRNA expression signatures in biofluids aiding in forensic identification

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HTG EdgeSeq Immune Response Panel COVID-19 SARS-CoV-2 Case Study

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Brochures

HTG EdgeSeq System Workflow Brochure

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Comprehensive Tumor Profiling Brochure

Download pdf 490KB

 

Gene Lists

HTG Transcriptome Panel Probe List

Download pdf 378KB

 

HTG EdgeSeq DLBCL Cell of Origin Assay Gene List

Download pdf 70KB

 

HTG EdgeSeq miRNA Whole Transcriptome Assay Cross-Species Gene List

Download pdf 238KB

 

HTG EdgeSeq Oncology Biomarker Panel Gene List

Download pdf 198KB

 

Select and download available HTG EdgeSeq Oncology Biomarker Panel genes


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HTG EdgeSeq Oncology Biomarker Panel Gene List

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Annotated Gene List HTG EdgeSeq Precision Immuno-Oncology Panel

Download pdf 168KB

 

HTG EdgeSeq Precision Immuno-Oncology Panel Gene List

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HTG EdgeSeq Immune Response Panel Gene List

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HTG EdgeSeq Immune Response Panel Annotated Gene List

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HTG EdgeSeq Mouse mRNA Tumor Response Panel Gene List

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Product Sheets

HTG Transcriptome Panel Product Sheet

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HTG EdgeSeq Immuno-Oncology Assay Product Sheet

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HTG EdgeSeq miRNA Whole Transcriptome Assay Product Sheet

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HTG EdgeSeq Oncology Biomarker Panel Product Sheet

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VERI/O Laboratory Services Product Sheet

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HTG EdgeSeq Precision Immuno-Oncology Panel Product Sheet

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HTG EdgeSeq System Product Sheet

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HTG EdgeSeq Immune Response Panel Product Sheet

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HTG EdgeSeq Pan B-Cell Lymphoma Panel Product Sheet

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HTG EdgeSeq Reveal Oncology Signatures Immune, Stroma and TME

Download pdf 198KB

 

HTG EdgeSeq Mouse mRNA Tumor Response Panel Product Sheet

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HTG EdgeSeq Reveal Product Sheet

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HTG EdgeSeq Reveal Oncology Signatures Immunophenotyping

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HTG EdgeSeq Reveal Immunophenotyping Signatures

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HTG EdgeSeq Reveal Immune, Stroma, and TME Signatures

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Tech Notes

Tech Note: HTG Transcriptome Panel Gene Expression Profiling Data Demonstrate High Correlation Using Illumina and Thermo Fisher Sequencing Platforms

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Tech Note: Application of HTG Transcriptome Panel for Targeted Gene Expression Profiling in COVID-19 Cases

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Tech Note: Immunophenotyping Lymphocytes in Tumors

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Tech Note: Measuring Immune Checkpoint Genes from FFPE Tissue

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Tech Note: Assessing Tumor Inflammation

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Tech Note: Epithelial Mesenchymal Transition in Immuno-Oncology

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Tech Note: Benchmark Study of HTG Transcriptome Panel and NanoString nCounter PanCancer Immune Profiling and Custom Panels

Download pdf 312KB

 

Safety Data Sheets

Lysis Buffer A Safety Data Sheet

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Probe Solution(s) Safety Data Sheets

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DNase Enzyme and Buffer Safety Data Sheet

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Nuclease Protection Probes Safety Data Sheet

Download pdf 203KB

 

RNA Extraction-Free Buffer Safety Data Sheet

Download pdf 239KB

 

100x Process Control Ladder Oligo Pool

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Biofluids Plasma Lysis Buffer Safety Data Sheet

Download pdf 266KB

 

Chemiluminescent Substrate A Safety Data Sheet

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Chemiluminescent Substrate B Safety Data Sheet

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Denaturation Oil Safety Data Sheet

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Detection Enzyme Buffer + Mixture Safety Data Sheet

Download pdf 128KB

 

Detection Linker Solution DL Safety Data Sheet

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Detection Probe Safety Data Sheet

Download pdf 128KB

 

HTG EdgeSeq Sequencing Tag Safety Data Sheet

Download pdf 171KB

 

Lysis Buffer Safety Data Sheet

Download pdf 196KB

 

Neutralization Solution Safety Data Sheet

Download pdf 157KB

 

Programming Linker Solution PL Safety Data Sheet

Download pdf 128KB

 

Proteinase K Safety Data Sheet

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Red Imaging Oil Safety Data Sheet

Download pdf 150KB

 

S1 Digestion Buffer Safety Data Sheet

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S1 Enzyme + Buffer Mixture Safety Data Sheet

Download pdf 132KB

 

S1 Stop Solution Safety Data Sheet

Download pdf 156KB

 

Termination Solution Safety Data Sheet

Download pdf 160KB

 

Wash Buffer Solution Safety Data Sheet

Download pdf 128KB

 

Videos

HTG 2022 Overview Video

HTG is a precision medicine company harnessing the power of RNA to drive translational research, clinical diagnostics and therapeutic development. HTG’s proprietary RNA technologies are designed to help better understand disease and treatment options for patients and to unlock a disruptive approach to drug discovery.

 

HTG Therapeutices Introduction

HTG Therapeutics is focused on utilizing its innovative technology platforms to create an entirely new generation of drug discovery tools aimed at developing therapeutic candidates with superior efficacy and safety profiles - transforming the process across a broad range of disease areas including oncology, immunology, diabetes, and rare diseases, among others.

 

A comparison of gene expression technologies in clinical applications

In this webcast Dr. Kerry Culm-Merdek of OncXerna and Dr. Marian Navratil of HTG Molecular review a cross-platform performance comparison study between RNA-Seq and  HTG's translational research profiling panel, the HTG EdgeSeq Precision Immuno-Oncology Panel.

 

HTG EdgeSeq Panels Empowers Precision Medicine

Learn about the benefits of the HTG EdgeSeq technology and how HTG is advancing precision medicine all starting with one 5 µl FFPE tissue. Get more answers from less sample.

 

LinkedIn Webinar: Virtual Podium 2020, Session 6, Precision Medicine

HTG joined Virtual Podium 2020 on May 1 for their Session 6 discussion on Precision Medicine.  Dr. James Cooley, HTG's Sr. Marketing Manager, Assays, presented on our new end-user bioinformatics pipeline for patient stratification in precision medicine with the HTG EdgeSeq Reveal software data analysis tool.  

 

 

HTG EdgeSeq technology and RNA-Seq technology

ASCO 2020 poster on platform comparison between HTG EdgeSeq technology and RNA-Seq narrated by HTG's Sr. Manager, Assay Development, Heather Gustafson.

 

 

The molecular landscape of oral neoplasias and the risk of progression to malignancy

ASCO 2019 Clinical Science Symposium, Dr. William from M.D. Anderson and Hospital BP in Sao Paulo Brazil presented an interesting body of work around the molecular landscape of oral neoplasias and the risk of progression to malignancy.

 

 

HTG EdgeSeq System Workflow

HTG Molecular's EdgeSeq system is a fully automated sample and library preparation method and platform for sequencing-based gene expression. 

 

HTG EdgeSeq Chemistry – Sample and Library Preparation

Narrated overview of the HTG EdgeSeq system sample and library preparation steps.

 

Webinars

Presenters : Dr. Leonie Frauenfeld and Sebastian Streich  

Institution: University of Tubingen, Germany

Originally aired on: Wednesday, May 24, 2023

 

 

Diffuse large B-cell lymphomas in adults with aberrant coexpression of CD10, BCL6, and MUM1 are enriched in IRF4 rearrangements 

by Dr. Leonie Frauenfeld

Diffuse large B-cell lymphoma (DLBCL) with aberrant coexpression of CD10+BCL6+MUM1+ (DLBCL-AE), classified as germinal center B cell (GCB) type by the Hans algorithm (HA), was genetically characterized. To capture the complexity of DLBCL-AE, collaborators used an integrated approach that included two different gene expression profiling (GEP) systems (HTG, EdgeSeq DLBCL Cell of Origin Assay and NanoString, Lymph2Cx assay), fluorescence in situ hybridization, targeted gene sequencing, and copy number (CN) arrays. The collaborators found that DLBCL-AE are genetically heterogeneous and enriched in cases with IRF4 alterations. The correlation between the 2 different GEP assays was very good, no discordant cases were classified as GCB or ABC, 5 unclassifiable cases in Lymph2Cx were classified as either ABC or GCB in HTG EdgeSeq. The LBCL-IRF4 in adults has many similarities to the pediatric counterpart, this entity is described as a definitive entity in both the International Consensus Classification of Mature Lymphoid Neoplasms and the 5th edition of the WHO Classification of Tumors of Hematopoietic and Lymphoid Tissues.

Prevalence of IRF4 rearrangement in large B-cell lymphomas of the Waldeyer's ring in adults        

by Sebastian Streich  

Diffuse large B-cell lymphoma (DLBCL) is the most common B-cell non-Hodgkin lymphoma in adults. Recent studies have suggested new subtypes of large B-cell lymphoma, based on genetic and molecular alterations, including the large B-cell lymphoma with IRF4-rearrangement (LBCL-IRF4), which are defined as a definite entity in the International Consensus Classification of Mature Lymphoid Neoplasms and in the 5th edition of the WHO Classification of Tumours of Hematopoietic and Lymphoid Tissues. We used fluorescence in situ hybridization (FISH), gene expression profiling (GEP) (HTG, EdgeSeq DLBCL Cell of Origin Assay), and next-generation sequencing (NGS) to comprehensively characterize LBCLs located in Waldeyer’s ring in adult patients and to identify cases of LBCL-IRF4.

 

Transcriptome-Wide GEP Profiles Reveal Different Patterns Between Synovial Sarcomas and Morphologic Mimickers

 

Presenters : Dr. Sabrina Borchert 

Institution: University Hispital Essen, Germany

Originally aired on: Friday, March 3, 2023

 

 

The ability to tailor treatment for individual cancer patients is one of the most pivotal goals of oncology precision medicine. To accomplish this, scientists must translate the biology driving each patient’s tumor in order to assess the risk of morbidity and mortality and identify an optimized plan for the best possible outcomes. In this webinar, Dr. Sabrina Borchert will discuss how she and her team tested the robustness and the reliability of a novel quantitative nuclease protection assay (HTG Transcriptome Panel) for patients suffering from spindle cell and synovial sarcoma. She will further describe how the investigators were able to compare genetically determined tumor entities with morphologic mimickers by applying a genome-wide transcriptional analysis. The full-text peer-reviewed publication can be accessed HERE.

 

Key Learning Objectives

Gain insight into recent advances in RNA-based gene expression profiling

Identify opportunities to improve outcomes for patients suffering from spindle cell and synovial sarcoma

Review the utility of ultra-efficient GEP in real-world applications, such as oncological research

Understand the benefits of novel profiling technologies compared to traditional methods

 

More Data From Less Material: Ultra-Efficient Transcriptome Profiling

 

Presenters : Dr. Sabrina Borchert and Andriana Gialeli

Institution: University Hispital Essen, Germany

Originally aired on: Wednesday, February 8, 2023

 

 

Translational Research Group at University Hospital Essen receives Qualified Service Provider certificate from HTG and presents two case studies. 

"Nuclease-protection-based Gene Expression Profiling and its Application in Translational Tumor Researh" by Dr. Sabrina Borchert

"MicroRNA Profiling of Cerebrospinal Fluid from Preterm Infants Following Perinatal Brain Injury" by Andriana Gialeli

 

The Role of RNA Profiling in Drug Discovery and Analysis

 

Presenter: Dr. Robert Spitale

Institution: University of California, Irvine

Originally aired on: Tuesday, December 13, 2022

 

The webinar featured a presentation from KOL, Dr. Robert Spitale, PhD, University of California – Irvine, who discussed how RNA molecules can be used to understand the pharmaceutical drug effects on humans and help develop them towards more successful clinical use. The HTG Therapeutics team dove into the value of early pre-clinical insights that can be collected through their proprietary and comprehensive transcriptome-informed drug discovery platform.


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Immunologically active phenotype by gene expression profiling is associated with clinical benefit from PD-1/PD-L1 inhibitors in real-world head and neck and lung cancer patients

 

Presenter: Dr. Pierre Saintigny

Institution: University Claude Bernard Lyon

Originally aired on: Friday, November 4, 2022

 

The webinar featured Dr. Pierre Saintigny, Professor of Medicine at University Claude Bernard Lyon 1 and a medical oncologist at the Léon Bérard (CLB) Cancer Center

The ability to tailor treatment for individual cancer patients is one of the most pivotal goals of oncology precision medicine. To accomplish this, scientists must translate the biology driving each patient’s tumor in order to assess the risk of morbidity and mortality and identify an optimized plan for the best possible outcomes. In this webinar Professor Saintigny will discuss how his team developed a reliable and stable scoring system using gene expression profiling to identify immunologically active tumors from patients with advanced head and neck squamous cell carcinomas (HNSCC) and non-small cell lung cancer (NSCLC) who can benefit from immunotherapy.


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Drug Candidate Attrition – How to Improve Clinical Development Success and Patient Outcomes

Presenter: Dr. Robert Spitale and Dr. Debrah Thompson

Institution: University of California – Irvine and HTG

Originally aired on: Wednesday, July 27, 2022

On July 27, 2022 HTG hosted a key opinion leader (KOL) webinar on “Drug Candidate Attrition – How to Improve Clinical Development Success and Patient Outcomes”.

The webinar featured a presentation from KOL, Dr. Robert Spitale, PhD, University of California – Irvine, who discussed the use of RNA-based platform technologies in drug discovery. The HTG Therapeutics team introduced their proprietary transcriptome-informed drug discovery platform as the cornerstone of their differentiated and de-risked approach to small molecule drug discovery.


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Integration of the HTG Transcriptome Panel into Preclinical and Clinical Programs to Drive Precision Medicine Research

Presenter: Dr. Peter Ansell and Dr. Marian Navratil

Institution: Abbvie and HTG

Originally aired on: Thursday, June 23, 2022

The ability to predict the cancer treatment for each individual patient is one of the most pivotal goals of oncology precision medicine. To accomplish this, scientists must gain an improved understanding of the biology driving each patient’s tumor. Differential gene expression can identify which molecular pathways are aberrantly regulated and thereby inform which treatment will be most effective.

Often such studies are limited due to sample size or quality issues, long turnaround times for lab processing, difficulty in deciphering the data, and insufficient reproducibility for an eventual companion diagnostic test.

In this talk, Dr. Peter Ansell from AbbVie discusses how his team overcame some of these challenges using novel technologies available on the market. He presents a case study to demonstrate the utility of such technologies and their benefits over traditional gene expression profiling methods. Lastly, discusses the future of biomarker-based treatments for oncology patients and the impact HTG is making in the field.

Key Learning Objectives

  • Overview of advances in RNA-based gene expression profiling
  • Introduction to ultra-efficient gene expression profiling (GEP) technology and its importance in maximizing reliable information while conserving precious samples
  • Evaluation of the utility of ultra-efficient GEP in real-world applications, such as for clinical and preclinical oncology research
  • Discussion about the benefits of novel profiling technologies compared to traditional methods


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Vascular Damage, Thromboinflammation, Plasmablast Activation, T-Cell Dysregulation and Pathological Histocytic Response in Pulmonary Draining Lymph Nodes of COVID-19

Presenter: Dr. Alexander Tzankov and Selina Gaertner
Institution: Institute of Medical Genetics and Pathology at University Hospital Basel, Switzerland and HTG
Originally aired on: Tuesday, March 29, 2022

 

The presentation highlights how HTG EdgeSeq technology was used to shed light on on gene expression profiles of  challenging FFPE tissue samples collected during autopsy of patients who passed away from COVID-19.

Autopsy studies of COVID-19 casualties can shed light on the disease, it’s effect on human organism, and potential treatments. Researchers conducted a comprehensive study of autopsy samples collected from March to April 2020, to better understand the pathophysiology and gene expression regulation. With use of HTG EdgeSeq technology they were able to uncover unexpected gene expression profiles such as overexpression of genes related to platelet/vascular functions and angiogenesis and downregulation of genes related to T-/NK functions, leukocyte adhesion and migration. These findings can lead to development of more targeted treatment options in the future.


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HTG Transcriptome Panel revealed fusion type dependent biomarkers, impacting overall survival in Synovial Sarcoma

Presenters: Dr. Hans-Ulrich Schildhaus and Selina Gaertner
Institution: Institute of Pathology, University Hospital Essen and HTG
Originally aired on: Tuesday, February 11, 2022

The presentation introduces HTG EdgeSeq technology and HTG Transcriptome Panel (HTP) as well as highlights how HTP was used to reveal fusion type biomarkers impacting overall survival in synovial sarcoma patients.

Synovial Sarcomas (SyS) represent a group of soft tissue sarcomas which affect patients at a wide age range, including adolescents and young adults. Most SyS are clinically aggressive, many patients suffer from local relapse and even from distant metastases. Sys is paradigm for gene fusion events which until recently was difficult to investigate. However, with the new developments in transcriptome profiling technologies, especially with extraction-free transcriptome profiling tools, the researchers identified differentially expressed genes that are linked to different translocation types. The identified biomarkers offer new opportunities for improved diagnostics for aggressive synovial sarcoma patients.


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Breast Cancer Recurrence Risk Classification and Molecular Subtyping Using HTG EdgeSeq Technology

Presenter: Dr. Jose Antonio López Guerrero
Institution: Instituto Valenciano de Oncología (IVO)
Originally aired on: Tuesday, November 9, 2021

 

The presentation highlights how HTG EdgeSeq technology can be used to determine recurrence risk and molecular subtyping of early-stage HR+ and HER-2 breast cancer.

Breast Cancer is a heterogeneous group of different disease subtypes, each with its own biological and clinical characteristics. The traditional clinical and pathological methods of estimating the probability of breast cancer recurrence use patient age, tumor size, tumor grade , and number of involved axillary lymph nodes. Estrogen and progesterone receptor expression used to be evaluated using immunohistochemistry. However, with the current advances in transcriptome profiling technologies the researchers were able to use HTG Edgeseq Precision Immuno-Oncology Panel and HTG EdgeSeq Pan B-Cell Lymphoma Panel to shed new light on the disease and possible treatment options.


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Fusion Type Dependent Biomarkers Impacting Overall Survival in Synovial Sarcoma, Revealed by HTG Transcriptome Profiling

Presenter: Dr. Hans-Ulrich Schildhaus

Institution: Institute of Pathology, University Hospital Essen and West German Cancer Center Essen in Germany
Originally aired on: Wednesday, November 10, 2021

Synovial Sarcomas (SyS) represent a group of soft tissue sarcomas which affect patients at a wide age range, including adolescents and young adults. Most SyS are clinically aggressive, many patients suffer from local relapse and even from distant metastases. Sys is paradigm for gene fusion events which until recently was difficult to investigate. However, with the new developments in transcriptome profiling technologies the researchers were able to explore how comprehensive gene expression analyses can help to define SyS and SyS subgroups, determine how SyS as a group differ from other sarcomas, and to identify differentially expressed genes that are relevant to the disease.


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NATURE SHORTCAST: Utilizing GEP to Integrate Biomarker Data and Illuminate Complex Biology

Originally aired on: Tuesday, September 18, 2018

This presentation will highlight our newly released HTG EdgeSeq Precision Immuno-Oncology Panel that was specifically developed to answer a wide range of translational questions tied to immuno-oncology and known drug resistance pathways.

 

MicroRNAs in CSF as prodromal biomarkers for Huntington’s disease

Originally aired on: Tuesday, May 29, 2018

The Myers lab has studied microRNAs (miRNA) in Huntington disease (HD) brain, plasma and cerebrospinal fluid (CSF).  In a study to assess the potential of miRNAs as biomarkers for disease, we found increased miRNA levels were detected in CSF for carriers of the HD trinucleotide repeat expansion mutation up to twenty years before expected disease onset.  Levels increased as proximity to onset decreased suggesting miRNAs may serve as effective biomarkers for prodromal disease long before disease manifestation. 

 

Integrated Molecular Profiling of Genitourinary Tumors: Applications for Personalized Radiotherapy

Originally aired on: Wednesday, June 28, 2017

In this webcast, Dr. Omar Mian, from Cleveland Clinic Foundation,  will:

  • Review the basic principles of personalized radiotherapy
  • Describe the clinical unmet need for improved molecular biomarkers
  • Understand the rationale for tumor profiling in terms of genotype / phenotype relationships
  • Recognize the value of integrated approaches exploring genetic, structural, and epigenetic alterations
  • Discuss the value of cell free DNA as a biomarker in non-invasive detection

 

Evaluation of a novel microRNA Whole Transcriptome Assay

Originally aired on: Wednesday, April 12, 2017

In this webcast, the performance of the HTG EdgeSeq miRNA Whole Transcriptome Assay (WTA) is evaluated using the samples and methods from the miRQC study. 

 

FFPE Tissue and the HTG EdgeSeq Oncology Biomarker Panel

Originally aired on: Tuesday, September 20, 2016

HTG EdgeSeq Oncology Biomarker Panel covers 2,560 genes.  This pilot study examined different amounts of tissue input from 3 colorectal and 2 breast tumors down to 3.1 mm2, representing ¼ the recommended input.

 

New tools for Biomarker Discovery Promise Personalized Treatment for Rheumatoid Arthritis

Originally aired on: Tuesday, July 26, 2016

This webinar outlined an ongoing project to develop personalized treatment strategies for rheumatoid arthritis patients using miRNA profiling. 

 

Expression-Based Profiling of Challenging FFPE Tumor Samples

Originally aired on: Thursday, May 19, 2016

This webinar focused on recent advances in gene expression profiling of challenging formalin-fixed, paraffin-embedded tissue samples for cancer research and clinical practice. The presentation covered studies in non-small cell lung cancer and pancreatic cancer. 

 

NGS-Based miRNA Profiling to Develop Signatures of Potential Clinical Applications

Originally aired on: Wednesday, December 2, 2015

This webinar discusses potential clinical applications for miRNA signatures and a novel, extraction-free miRNA profiling technology for advancing biomarker discovery. 

 

Page last updated July 28, 2022